If you do not have the dssp program, get it from jules-jewelry.com gmx do_dssp assumes that the dssp If you have an older version of dssp, use the - ver option to direct do_dssp to use the older syntax. jules-jewelry.com There is some information about DSSP on Wikipedia. Information on the official implementations, and a copy of the original paper can be found. for secondary structure analysis by gromacs i need to install dssp but i dont know how i Download DSSP executable from jules-jewelry.com
Read 3 answers by scientists with 1 recommendation from their colleagues to the question asked by Budheswar Dehury on Apr 19, It is also possible to generate a plot of the secondary structure per residue versus time using Gromacs. You first need to make sure that the program DSSP is. jules-jewelry.comues at jules-jewelry.com> > Reply-To: gmx-users at jules-jewelry.com > Subject: Re: [gmx-users] DSSP installation > To: gmx-users at.
Analysis of a gromacs simulation For this we will use the gromacs. trajectory First, we need to tell gromacs where the DSSP program for secondary structure. Introduction. The DSSP program was designed by Wolfgang Kabsch and Chris Sander to standardize secondary structure assignment. DSSP is a database of. How to run the DSSP secondary structure analysis tool with GROMACS without a segmentation fault. DSSP is not in official ubuntu repositories, but you can install it manually: sudo wget.